In prokaryotic DNA the major methylated
bases are N6-methyladenine (mA)
and to a lesser extent N4-methylcytosine. Methylation in bacteria occurs at specific sites.
In E. coli, methylation of A residues in the sequence 5´-GATC-3´
is involved in mismatch error correction, and it plays a role
in controlling initiation of DNA replication. Methylation at other
sites protects DNA against cleavage by restriction endonucleases
(described here).