5-Fluorodeoxyuridine monophosphate (FdUMP) is a molecule that is a mechanism-based
inhibitor. Irreversible binding of FdUMP to thymidylate
synthase occurs only in the presence of 5,10-methylenetetrahydrofolate,
a cofactor for the reaction catalyzed by thymidylate synthase
(Figure 22.18). Crystallographic
analysis of thymidylate synthase with dUMP
and an analog of 5,10-methylenetetrahydrofolate (that could not
be acted on by the enzyme) revealed that thymidylate synthase
normally makes a transient covalent bond in the process of catalysis
of the reaction. Apparently FdUMP's structure traps the
enzyme-substrate covalent bond in the reaction intermediate and
prevents it from breaking down, thereby halting the enzyme from
acting.