Most organisms can synthesize purine and pyrimidine nucleotides (Figure 4.2) from low-molecular-weight precursors in amounts sufficient for their needs. These de novo pathways (Figure 22.1) are essentially identical in all organisms. Nucleotides can also be synthesized from the partial breakdown of previously synthesized nucleotides. These pathways are called salvage pathways. A schematic showing the simple relationships between de novo and salvage pathways is shown in Figure 22.2.
Degradation of pyrimidine and purine bases
can occur intracellularly as a result of cell death or, in animals,
through digestion of nucleic acids ingested in the diet (major
source). Cleavage begins at the phosphodiester bonds (Figure
4.1) with endonucleases (pancreatic ribonuclease or DNase)
in the small intestine. The oligonucleotides resulting from this
action are then cleaved exonucleolytically by nonspecific enzymes
called phosphodiesterases. The products of this reaction are 5'
or 3' monophosphates, depending on the specificities of the enzymes.
Phosphomonoesterases called nucleotidases cleave phosphates from
the nucleotides, yielding nucleosides and orthophosphate. Nucleoside
phosphorylases act, as shown here
to yield a base and ribose-1-phosphate.
If bases or nucleosides are not reused for nucleic acid synthesis
via salvage pathways, the bases are further degraded to uric acid (purines) or
-ureidopropionate (pyrimidines).
Note that the reaction (shown here) is reversible, providing a way for a cell to rebuild a nucleoside from ribose-1-phosphate and a base. Some cells have enzymes called nucleoside kinases which, in the presence of ATP, convert the nucleoside to a nucleotide.